Package index • atlantio

All functions

Atlantis(): Atlantis Ecosystem Model Container
atlantis_examples(): Helper function to quickly access example files.
atlantis_load_files(): Load Atlantis files into model object
atlantis_supported_versions: Atlantis versions supported by atlantio
create_diet_table(): Create Diet Table
create_foodweb(): Create Food Web for Atlantis objects
create_time_series(): Create Time Series for Atlantis objects
create_time_series_biomass(): Create Time Series Biomass for Atlantis objects
generate_calibration_table(): Generate a calibration table
generate_file(): Generate parameter files
get_biomass_by_type(): Extract biomass data by aggregation type
input_files: Input files
inverse_transform_parameter_value(): Map a parameter value from the file scale back to the calibration scale
list_atlantis_parameters(): List Atlantis parameters for a given Atlantis version
new_atlantis(): Create new Atlantis model object
parameters_hints: Parameter Hints for Atlantis Model Configuration
read_atlantis_files() read_bgm() read_nc() read_group_file() read_prm_files() read_txt_files() read_xml(): Read Atlantis inputs and outputs files
read_prm() write_prm(): Parse .prm file contents into structured list
transform_parameter_value(): Transform a parameter value