Environmental management & Biodiversity Data science

Solutions Support Training


  1. Cazelles K. . (2023). Isolating interactions from co-occurrences. Nature Ecology & Evolution 8 (2). 10.1038/s41559-023-02245-z
  2. Harvey E., Marleau J., Gounand I., Leroux S., Firkowski C., Altermatt F., Guillaume Blanchet F., Cazelles K. , Chu C., D'Aloia C., Donelle L., Gravel D., Guichard F., McCann K., Ruppert J., Ward C., Fortin M. (2023). A general meta‐ecosystem model to predict ecosystem functions at landscape extents. Ecography 2023 (11). 10.1111/ecog.06790
  3. Cazelles B., Cazelles K. , Tian H., Chavez M., Pascual M. (2023). Disentangling local and global climate drivers in the population dynamics of mosquito-borne infections. Science Advances 9 (39). 10.1126/sciadv.adf7202
  4. Beauchesne D. , Cazelles K. , Daigle R., Gravel D., Archambault P. (2023). Ecological interactions amplify cumulative effects in marine ecosystems. 10.21203/
  5. Saulnier-Talbot É., Duchesne E., Antoniades D., Arseneault D., Barnard C., Berteaux D., Bhiry N., Bouchard F., Boudreau S., Cazelles K. , Comte J., Corbeil-Robitaille M., Côté S., Couture R., Fontaine G., Domine F., Fauteux D., Fortier D., Garneau M., Gauthier G., Gravel D., Laurion I., Lavoie M., Lecomte N., Legagneux P., Lévesque E., Naud M., Paquette M., Payette S., Pienitz R., Rautio M., Roy A., Royer A., Simard M., Vincent W., Bêty J. (2023). State shifts and divergent sensitivities to climate warming across northern ecosystems. 10.21203/
  6. Dreujou E., Beauchesne D. , Daigle R., Carrière J., Noisette F., McKindsey C., Archambault P. (2023). Multiple human activities in coastal benthic ecosystems: Introducing a metric of cumulative exposure. Elem Sci Anth 11 (1). 10.1525/elementa.2023.00024
  7. Huot M., Dalgleish F., Beauchesne D. , Piché M., Archambault P. (2023). Machine learning for underwater laser detection and differentiation of macroalgae and coral. Frontiers in Remote Sensing 4. 10.3389/frsen.2023.1135501
  8. Gutgesell M., McCann K., Gellner G., Cazelles K. , Greyson-Gaito C., Bieg C., Guzzo M., Warne C., Ward C., O'Connor R., Scott A., Graham B., Champagne E., McMeans B. (2022). On the dynamic nature of omnivory in a changing world. BioScience 72 (5). 10.1093/biosci/biab144
  9. Galiana N., Lurgi M., Bastazini V., Bosch J., Cagnolo L., Cazelles K. , Claramunt-López B., Emer C., Fortin M., Grass I., Hernández-Castellano C., Jauker F., Leroux S., McCann K., McLeod A., Montoya D., Mulder C., Osorio-Canadas S., Reverté S., Rodrigo A., Steffan-Dewenter I., Traveset A., Valverde S., Vázquez D., Wood S., Gravel D., Roslin T., Thuiller W., Montoya J. (2022). Ecological network complexity scales with area. Nature Ecology & Evolution 6 (3). 10.1038/s41559-021-01644-4
  10. Poisot T., Bergeron G., Cazelles K. , Dallas T., Gravel D., MacDonald A., Mercier B., Violet C., Vissault S. . (2021). Global knowledge gaps in species interaction networks data. Journal of Biogeography 48 (7). 10.1111/jbi.14127
  11. Cazelles K. , Zemlak T., Gutgesell M., Myles-Gonzalez E., Hanner R., Shear McCann K. (2021). Spatial fingerprinting: Horizontal fusion of multi-dimensional bio-tracers as solution to global food provenance problems. Foods 10 (4). 10.3390/foods10040717
  12. Isabel L., Beauchesne D. , McKindsey C., Archambault P. (2021). Detection of ecological thresholds and selection of indicator taxa for epibenthic communities exposed to multiple pressures. Frontiers in Marine Science 8. 10.3389/fmars.2021.720710
  13. Beauchesne D. , Cazelles K. , Archambault P., Dee L., Gravel D. (2021). On the sensitivity of food webs to multiple stressors. Ecology Letters 24 (10). 10.1111/ele.13841
  14. Fajardo P., Beauchesne D. , Carbajal-López A., Daigle R., Fierro-Arcos L., Goldsmit J., Zajderman S., Valdez-Hernández J., Terán Maigua M., Christofoletti R. (2021). Aichi target 18 beyond 2020: Mainstreaming traditional biodiversity knowledge in the conservation and sustainable use of marine and coastal ecosystems. PeerJ 9. 10.7717/peerj.9616
  15. McCann K., MacDougall A., Fussmann G., Bieg C., Cazelles K. , Cristescu M., Fryxell J., Gellner G., Lapointe B., Gonzalez A. (2020). Ecosystem entanglement and the propagation of nutrient-driven instability. 10.1101/2020.04.20.050302
  16. McCann K., Cazelles K. , MacDougall A., Fussmann G., Bieg C., Cristescu M., Fryxell J., Gellner G., Lapointe B., Gonzalez A. (2020). Landscape modification and nutrient‐driven instability at a distance. Ecology Letters 24 (3). 10.1111/ele.13644
  17. Blanchet F., Cazelles K. , Gravel D. (2020). Co‐occurrence is not evidence of ecological interactions. Ecology Letters 23 (7). 10.1111/ele.13525
  18. Warne C., McCann K., Rooney N., Cazelles K. , Guzzo M. (2020). Geography and morphology affect the ice duration dynamics of northern hemisphere lakes worldwide. Geophysical Research Letters 47 (12). 10.1029/2020gl087953
  19. Poisot T., Bergeron G., Cazelles K. , Dallas T., Gravel D., Macdonald A., Mercier B., Violet C., Vissault S. . (2020). Environmental biases in the study of ecological networks at the planetary scale. 10.1101/2020.01.27.921429
  20. Dreujou E., Carrier-Belleau C., Goldsmit J., Fiorentino D., Ben-Hamadou R., Muelbert J., Godbold J., Daigle R., Beauchesne D. . (2020). Holistic environmental approaches and aichi biodiversity targets: Accomplishments and perspectives for marine ecosystems. PeerJ 8. 10.7717/peerj.8171
  21. Beauchesne D. , Daigle R., Vissault S. , Gravel D., Bastien A., Bélanger S., Bernatchez P., Blais M., Bourdages H., Chion C., Galbraith P., Halpern B., Lavoie C., McKindsey C., Mucci A., Pineault S., Starr M., Ste-Marie A., Archambault P. (2020). Characterizing exposure to and sharing knowledge of drivers of environmental change in the st. Lawrence system in canada. Frontiers in Marine Science 7. 10.3389/fmars.2020.00383
  22. Brice M., Vissault S. , Vieira W., Gravel D., Legendre P., Fortin M. (2020). Moderate disturbances accelerate forest transition dynamics under climate change in the temperate--boreal ecotone of eastern north america. Global Change Biology 26 (8).
  23. Beauchesne D. , Daigle R., Vissault S. , Gravel D., Bastien A., Bélanger S., Bernatchez P., Blais M., Bourdages H., Chion C., (2020). Characterizing exposure to and sharing knowledge of drivers of environmental change in the st. Lawrence system in canada. Frontiers in Marine Science 7.
  24. Vissault S. , Talluto M., Boulangeat I., Gravel D. (2020). Slow demography and limited dispersal constrain the expansion of north-eastern temperate forests under climate change. Journal of Biogeography 47 (12).
  25. Solarik K., Cazelles K. , Messier C., Bergeron Y., Gravel D. (2019). Priority effects will impede range shifts of temperate tree species into the boreal forest. Journal of Ecology 108 (3). 10.1111/1365-2745.13311
  26. Brice M., Cazelles K. , Legendre P., Fortin M. (2019). Disturbances amplify tree community responses to climate change in the temperate--boreal ecotone. Global Ecology and Biogeography 28 (11). 10.1111/geb.12971
  27. Cazelles K. , Vissault S. . (2019). Rmangal: Making ecological networks easily accessible. 10.59350/51nby-5v347
  28. Cazelles K. , Bartley T., Guzzo M., Brice M., MacDougall A., Bennett J., Esch E., Kadoya T., Kelly J., Matsuzaki S., Nilsson K., McCann K. (2019). Homogenization of freshwater lakes: Recent compositional shifts in fish communities are explained by gamefish movement and not climate change. Global Change Biology 25 (12). 10.1111/gcb.14829
  29. Albouy C., Archambault P., Appeltans W., Araújo M., Beauchesne D. , Cazelles K. , Cirtwill A., Fortin M., Galiana N., Leroux S., Pellissier L., Poisot T., Stouffer D., Wood S., Gravel D. (2019). The marine fish food web is globally connected. Nature Ecology & Evolution 3 (8). 10.1038/s41559-019-0950-y
  30. Cazelles K. , McCann K. (2019). Diversity-stability and the structure of perturbations. Peer Community In Ecology 10.24072/pci.ecology.100017
  31. Bartley T., Guzzo M., Cazelles K. , Verville A., McMeans B., McCann K. (2019). Thermal preference influences depth use but not biomass of predatory fishes in response to lake morphometry. 10.1101/572925
  32. Bartley T., McCann K., Bieg C., Cazelles K. , Granados M., Guzzo M., MacDougall A., Tunney T., McMeans B. (2019). Food web rewiring in a changing world. Nature Ecology & Evolution 3 (3). 10.1038/s41559-018-0772-3
  33. Wheeler H., Berteaux D., Furgal C., Cazelles K. , Yoccoz N., Grémillet D. (2019). Identifying key needs for the integration of social--ecological outcomes in arctic wildlife monitoring. Conservation Biology 33 (4). 10.1111/cobi.13257
  34. Becker-Scarpitta A., Vissault S. , Vellend M. (2019). Four decades of plant community change along a continental gradient of warming. Global change biology 25 (5).
  35. Bartomeus I., Cazelles K. , Geschke J. (2018). Rcites - the story behind the package. 10.59350/4q40p-bxr56
  36. Geschke J., Cazelles K. , Bartomeus I. (2018). Rcites: An r package to access the CITES speciesplus database. Journal of Open Source Software 3 (31). 10.21105/joss.01091
  37. Galiana N., Lurgi M., Claramunt-López B., Fortin M., Leroux S., Cazelles K. , Gravel D., Montoya J. (2018). The spatial scaling of species interaction networks. Nature Ecology & Evolution 2 (5). 10.1038/s41559-018-0517-3
  38. MacDougall A., Harvey E., McCune J., Nilsson K., Bennett J., Firn J., Bartley T., Grace J., Kelly J., Tunney T., McMeans B., Matsuzaki S., Kadoya T., Esch E., Cazelles K. , Lester N., McCann K. (2018). Context-dependent interactions and the regulation of species richness in freshwater fish. Nature Communications 9 (1). 10.1038/s41467-018-03419-1
  39. Legagneux P., Casajus N., Cazelles K. , Chevallier C., Chevrinais M., Guéry L., Jacquet C., Jaffré M., Naud M., Noisette F., Ropars P., Vissault S. , Archambault P., Bêty J., Berteaux D., Gravel D. (2018). Our house is burning: Discrepancy in climate change vs. Biodiversity coverage in the media as compared to scientific literature. Frontiers in Ecology and Evolution 5. 10.3389/fevo.2017.00175
  40. Kopelke J., Nyman T., Cazelles K. , Gravel D., Vissault S. , Roslin T. (2017). Food‐web structure of willow‐galling sawflies and their natural enemies across europe. Ecology 98 (6). 10.1002/ecy.1832
  41. Massol F., Dubart M., Calcagno V., Cazelles K. , Jacquet C., Kéfi S., Gravel D. (2017). Island biogeography of food webs. Advances in ecological research 10.1016/bs.aecr.2016.10.004
  42. Marchese C., Albouy C., Tremblay J., Dumont D., D'Ortenzio F., Vissault S. , Bélanger S. (2017). Changes in phytoplankton bloom phenology over the north water (NOW) polynya: A response to changing environmental conditions. Polar Biology 40 (9).
  43. Talluto M., Boulangeat I., Vissault S. , Thuiller W., Gravel D. (2017). Extinction debt and colonization credit delay range shifts of eastern north american trees. Nature ecology & evolution 1 (7).
  44. Cazelles K. , Mouquet N., Mouillot D., Gravel D. (2016). On the integration of biotic interaction and environmental constraints at the biogeographical scale. Ecography 39 (10). 10.1111/ecog.01714
  45. Beauchesne D. , Grant C., Gravel D., Archambault P. (2016). L'évaluation des impacts cumulés dans l'estuaire et le golfe du saint-laurent : Vers une planification systémique de l'exploitation des ressources. Conservation/Développement durable 140 (2). 10.7202/1036503ar
  46. Poisot T., Cirtwill A., Cazelles K. , Gravel D., Fortin M., Stouffer D. (2015). The structure of probabilistic networks. Methods in Ecology and Evolution 7 (3). 10.1111/2041-210x.12468
  47. Cazelles K. , Araújo M., Mouquet N., Gravel D. (2015). A theory for species co-occurrence in interaction networks. Theoretical Ecology 9 (1). 10.1007/s12080-015-0281-9
  48. Le Stradic S., Silveira F., Buisson E., Cazelles K. , Carvalho V., Fernandes G. (2015). Diversity of germination strategies and seed dormancy in herbaceous species of campo rupestre grasslands. Austral Ecology 40 (5). 10.1111/aec.12221
  49. Cazelles B., Cazelles K. . (2014). Major urban centers have weak influence on the timing of dengue epidemics in southeast asia. International Journal of Infectious Diseases 21. 10.1016/j.ijid.2014.03.873
  50. Cazelles B., Cazelles K. , Chavez M. (2014). Wavelet analysis in ecology and epidemiology: Impact of statistical tests. Journal of The Royal Society Interface 11 (91). 10.1098/rsif.2013.0585
  51. Beauchesne D. , Jaeger J., St-Laurent M. (2014). Thresholds in the capacity of boreal caribou to cope with cumulative disturbances: Evidence from space use patterns. Biological Conservation 172. 10.1016/j.biocon.2014.03.002
  52. Thuiller W., Münkemüller T., Schiffers K., Georges D., Dullinger S., Eckhart V., Edwards Jr T., Gravel D., Kunstler G., Merow C., (2014). Does probability of occurrence relate to population dynamics?. Ecography 37 (12).
  53. Cazelles K. , Otten W., Baveye P., Falconer R. (2013). Soil fungal dynamics: Parameterisation and sensitivity analysis of modelled physiological processes, soil architecture and carbon distribution. Ecological Modelling 248. 10.1016/j.ecolmodel.2012.08.008
  54. Beauchesne D. , Jaeger J., St-Laurent M. (2013). Disentangling woodland caribou movements in response to clearcuts and roads across temporal scales. PLoS ONE 8 (11). 10.1371/journal.pone.0077514
  55. St-Laurent M., Renaud L., Leblond M., Beauchesne D. . (2012). Synthèse des connaissances relatives aux impacts des routes sur l'écologie du caribou. Le Naturaliste canadien 136 (2). 10.7202/1009105ar

Technical reports

  1. Bellavance V., Deslongchamps G., Beauchesne D., Grant C., Archambault P. (2024). Activité 2 : Identification des habitats potentiels des plumes de mer dans l'estuaire maritime et le golfe du Saint-Laurent. Pêches et Océans Canada.
  2. Deslongchamps G., Bellavance V., Beauchesne D., Grant C., Archambault P. (2024). Activité 1 : Évaluation de la vulnérabilité des coraux et des éponges de l'estuaire maritime et du golfe du Saint-Laurent face aux différents stresseurs. Pêches et Océans Canada.
  3. Beauchesne D., Grant C., Archambault P. (2023). Cumulative effects of natural and human drivers on food webs in the offshore Scotian Shelf Bioregion to support Marine Spatial Planning. Fisheries and Oceans Canada.
  4. Beauchesne D., Grant C., Archambault P. (2022). Cumulative effects assessment of marine vessel activities in the St. Lawrence and the Saguenay River -- Pilot Project for Transport Canada.. Transport Canada.
  5. Stoyel Q., Finnis S., Gomez C., Lazin G., Daigle R., Brager L., Hamer A., Smith C., Beauchesne D., Cazelles K., Butler S. (2022). An open, efficient, and transparent spatial reproducible reporting tool for data discovery and science advice /Fs97-6/3495E-PDF - Government of Canada Publications -
  6. Lachance S., Beauchesne D.. (2017). Étude de planification systématique de la conservation à l'aide de l'outil Marxan : Rapport final d'analyse d'une étude de cas sur le territoire continental du Plan Nord (Québec). Ministère du Développement Durable et de la Lutte contre les Changements Climatiques.
  7. Grant C., Monpert C., Rondeau M., Beauchesne D., Stoeffler C. (2015). Cartographie de bancs de laminaires à l'aide de méthodes acoustiques.
  8. Beauchesne D., Cadotte M, Dussault C., St-Laurent M. (2014). Revue de littérature critique sur le contrôle des prédateurs dans un contexte de conservation du caribou forestier au Québec. Ministère de la Forêt, de la Faune et des Parcs.
  9. Beauchesne D., Faille G., Brêthes J. (2014). Étude concernant une aire marine protégée aux îles de la Madeleine. Volume 1. Rapport d'étude et analyse écologique. Ministère du Développement durable, de l'Environnement, de la Faune et des Parcs & Parcs Canada.
  10. Grant C., Faille G., Beauchesne D.. (2014). Étude concernant une aire marine protégée aux îles de la Madeleine. Volume 3. Atlas cartographique des îles de la Madeleine. Ministère du Développement durable, de l'Environnement, de la Faune et des Parcs & Parcs Canada.
  11. St-Laurent M., Beauchesne D., Dussault C., Lesmerises F. (2014). Évaluation des impacts des chemins forestiers sur l'écologie du caribou forestier au Québec. Ministère de la Forêt, de la Faune et des Parcs.
  12. Renaud L., Leblond M., Beauchesne D., St-Laurent M. (2010). Synthèse des connaissances relatives aux impacts du réseau routier sur l'écologie du caribou forestier. Revue de littérature présentée à l'équipe de rétablissement provinciale du caribou forestier.