inSileco

Environmental Management & Biodiversity Data Science

Solutions Support Training

Publications

  1. Beauchesne D. , Cazelles K. , Daigle R., Gravel D., Archambault P. (2025). Ecological interactions amplify cumulative effects in marine ecosystems. DOI: 10.1126/sciadv.adp9315
  2. Saulnier-Talbot É., Duchesne É., Antoniades D., Arseneault D., Barnard C., Berteaux D., Bhiry N., Bouchard F., Boudreau S., Cazelles K. , Comte J., Corbeil-Robitaille M., Côté S., Couture R., Lafontaine G., Domine F., Fauteux D., Fortier D., Garneau M., Gauthier G., Gravel D., Laurion I., Lavoie M., Lecomte N., Legagneux P., Lévesque E., Naud M., Paquette M., Payette S., Pienitz R., Rautio M., Roy A., Royer A., Simard M., Vincent W., Bêty J. (2024). Expert elicitation of state shifts and divergent sensitivities to climate warming across northern ecosystems. DOI: 10.1038/s43247-024-01791-z
  3. Warne C., Guzzo M., Cazelles K. , Chu C., Rooney N., McCann K. (2024). Thermal tolerance and habitat preferences mediate how freshwater fish body sizes respond to warming. DOI: 10.1139/cjfas-2023-0233
  4. Dreujou E., Beauchesne D. , Daigle R., Carrière J., Noisette F., McKindsey C., Archambault P. (2023). Multiple human activities in coastal benthic ecosystems: Introducing a metric of cumulative exposure. DOI: 10.1525/elementa.2023.00024
  5. Huot M., Dalgleish F., Beauchesne D. , Piché M., Archambault P. (2023). Machine learning for underwater laser detection and differentiation of macroalgae and coral. DOI: 10.3389/frsen.2023.1135501
  6. Beauchesne D. . (2023). eDrivers, a knowledge platform on 22 environmental drivers present in the st. Lawrence system. DOI: 10.26071/OGSL-7C51AD5F-C2A9
  7. Cazelles K. . (2023). Isolating interactions from co-occurrences. DOI: 10.1038/s41559-023-02245-z
  8. Harvey E., Marleau J., Gounand I., Leroux S., Firkowski C., Altermatt F., Guillaume Blanchet F., Cazelles K. , Chu C., D'Aloia C., Donelle L., Gravel D., Guichard F., McCann K., Ruppert J., Ward C., Fortin M. (2023). A general meta‐ecosystem model to predict ecosystem functions at landscape extents. DOI: 10.1111/ecog.06790
  9. Cazelles B., Cazelles K. , Tian H., Chavez M., Pascual M. (2023). Disentangling local and global climate drivers in the population dynamics of mosquito-borne infections. DOI: 10.1126/sciadv.adf7202
  10. Saulnier-Talbot É., Duchesne E., Antoniades D., Arseneault D., Barnard C., Berteaux D., Bhiry N., Bouchard F., Boudreau S., Cazelles K. , Comte J., Corbeil-Robitaille M., Côté S., Couture R., Fontaine G., Domine F., Fauteux D., Fortier D., Garneau M., Gauthier G., Gravel D., Laurion I., Lavoie M., Lecomte N., Legagneux P., Lévesque E., Naud M., Paquette M., Payette S., Pienitz R., Rautio M., Roy A., Royer A., Simard M., Vincent W., Bêty J. (2023). State shifts and divergent sensitivities to climate warming across northern ecosystems. DOI: 10.21203/rs.3.rs-3026284/v1
  11. Gutgesell M., McCann K., Gellner G., Cazelles K. , Greyson-Gaito C., Bieg C., Guzzo M., Warne C., Ward C., O'Connor R., Scott A., Graham B., Champagne E., McMeans B. (2022). On the dynamic nature of omnivory in a changing world. DOI: 10.1093/biosci/biab144
  12. Galiana N., Lurgi M., Bastazini V., Bosch J., Cagnolo L., Cazelles K. , Claramunt-López B., Emer C., Fortin M., Grass I., Hernández-Castellano C., Jauker F., Leroux S., McCann K., McLeod A., Montoya D., Mulder C., Osorio-Canadas S., Reverté S., Rodrigo A., Steffan-Dewenter I., Traveset A., Valverde S., Vázquez D., Wood S., Gravel D., Roslin T., Thuiller W., Montoya J. (2022). Ecological network complexity scales with area. DOI: 10.1038/s41559-021-01644-4
  13. Isabel L., Beauchesne D. , McKindsey C., Archambault P. (2021). Detection of ecological thresholds and selection of indicator taxa for epibenthic communities exposed to multiple pressures. DOI: 10.3389/fmars.2021.720710
  14. Beauchesne D. , Cazelles K. , Archambault P., Dee L., Gravel D. (2021). On the sensitivity of food webs to multiple stressors. DOI: 10.1111/ele.13841
  15. Fajardo P., Beauchesne D. , Carbajal-López A., Daigle R., Fierro-Arcos L., Goldsmit J., Zajderman S., Valdez-Hernández J., Terán Maigua M., Christofoletti R. (2021). Aichi target 18 beyond 2020: Mainstreaming traditional biodiversity knowledge in the conservation and sustainable use of marine and coastal ecosystems. DOI: 10.7717/peerj.9616
  16. Poisot T., Bergeron G., Cazelles K. , Dallas T., Gravel D., MacDonald A., Mercier B., Violet C., Vissault S. . (2021). Global knowledge gaps in species interaction networks data. DOI: 10.1111/jbi.14127
  17. Cazelles K. , Zemlak T., Gutgesell M., Myles-Gonzalez E., Hanner R., Shear McCann K. (2021). Spatial fingerprinting: Horizontal fusion of multi-dimensional bio-tracers as solution to global food provenance problems. DOI: 10.3390/foods10040717
  18. Banville F., Vissault S. , Poisot T. (2021). Mangal.jl and EcologicalNetworks.jl: Two complementary packages for analyzing ecological networks in julia. DOI: 10.21105/joss.02721
  19. Dreujou E., Carrier-Belleau C., Goldsmit J., Fiorentino D., Ben-Hamadou R., Muelbert J., Godbold J., Daigle R., Beauchesne D. . (2020). Holistic environmental approaches and aichi biodiversity targets: Accomplishments and perspectives for marine ecosystems. DOI: 10.7717/peerj.8171
  20. Beauchesne D. , Daigle R., Vissault S. , Gravel D., Bastien A., Bélanger S., Bernatchez P., Blais M., Bourdages H., Chion C., Galbraith P., Halpern B., Lavoie C., McKindsey C., Mucci A., Pineault S., Starr M., Ste-Marie A., Archambault P. (2020). Characterizing exposure to and sharing knowledge of drivers of environmental change in the st. Lawrence system in canada. DOI: 10.3389/fmars.2020.00383
  21. McCann K., MacDougall A., Fussmann G., Bieg C., Cazelles K. , Cristescu M., Fryxell J., Gellner G., Lapointe B., Gonzalez A. (2020). Ecosystem entanglement and the propagation of nutrient-driven instability. DOI: 10.1101/2020.04.20.050302
  22. McCann K., Cazelles K. , MacDougall A., Fussmann G., Bieg C., Cristescu M., Fryxell J., Gellner G., Lapointe B., Gonzalez A. (2020). Landscape modification and nutrient‐driven instability at a distance. DOI: 10.1111/ele.13644
  23. Cazelles K. , Zemlak T., Gutgesell M., Myles-Gonzalez E., Hanner R., McCann K. (2020). Spatial fingerprinting: Horizontal fusion of multi-dimensional bio-tracers as solution to global food provenance problems. DOI: 10.1101/2020.10.01.322453
  24. Blanchet F., Cazelles K. , Gravel D. (2020). Co‐occurrence is not evidence of ecological interactions. DOI: 10.1111/ele.13525
  25. Warne C., McCann K., Rooney N., Cazelles K. , Guzzo M. (2020). Geography and morphology affect the ice duration dynamics of northern hemisphere lakes worldwide. DOI: 10.1029/2020gl087953
  26. Poisot T., Bergeron G., Cazelles K. , Dallas T., Gravel D., Macdonald A., Mercier B., Violet C., Vissault S. . (2020). Environmental biases in the study of ecological networks at the planetary scale. DOI: 10.1101/2020.01.27.921429
  27. Vissault S. , Talluto M., Boulangeat I., Gravel D. (2020). Slow demography and limited dispersal constrain the expansion of north‐eastern temperate forests under climate change. DOI: 10.1111/jbi.13978
  28. Brice M., Vissault S. , Vieira W., Gravel D., Legendre P., Fortin M. (2020). Moderate disturbances accelerate forest transition dynamics under climate change in the temperate--boreal ecotone of eastern north america. DOI: 10.1111/gcb.15143
  29. Albouy C., Archambault P., Appeltans W., Araújo M., Beauchesne D. , Cazelles K. , Cirtwill A., Fortin M., Galiana N., Leroux S., Pellissier L., Poisot T., Stouffer D., Wood S., Gravel D. (2019). The marine fish food web is globally connected. DOI: 10.1038/s41559-019-0950-y
  30. Solarik K., Cazelles K. , Messier C., Bergeron Y., Gravel D. (2019). Priority effects will impede range shifts of temperate tree species into the boreal forest. DOI: 10.1111/1365-2745.13311
  31. Brice M., Cazelles K. , Legendre P., Fortin M. (2019). Disturbances amplify tree community responses to climate change in the temperate--boreal ecotone. DOI: 10.1111/geb.12971
  32. Cazelles K. , Vissault S. . (2019). Rmangal: Making ecological networks easily accessible. DOI: 10.59350/51nby-5v347
  33. Cazelles K. , Bartley T., Guzzo M., Brice M., MacDougall A., Bennett J., Esch E., Kadoya T., Kelly J., Matsuzaki S., Nilsson K., McCann K. (2019). Homogenization of freshwater lakes: Recent compositional shifts in fish communities are explained by gamefish movement and not climate change. DOI: 10.1111/gcb.14829
  34. Cazelles K. , McCann K. (2019). Diversity-stability and the structure of perturbations. DOI: 10.24072/pci.ecology.100017
  35. Bartley T., Guzzo M., Cazelles K. , Verville A., McMeans B., McCann K. (2019). Thermal preference influences depth use but not biomass of predatory fishes in response to lake morphometry. DOI: 10.1101/572925
  36. Bartley T., McCann K., Bieg C., Cazelles K. , Granados M., Guzzo M., MacDougall A., Tunney T., McMeans B. (2019). Food web rewiring in a changing world. DOI: 10.1038/s41559-018-0772-3
  37. Wheeler H., Berteaux D., Furgal C., Cazelles K. , Yoccoz N., Grémillet D. (2019). Identifying key needs for the integration of social--ecological outcomes in arctic wildlife monitoring. DOI: 10.1111/cobi.13257
  38. Vissault S. , Gravel D., Poisot T. (2019). Mangal: An open infrastructure for ecological interactions. DOI: 10.3897/biss.3.37037
  39. Becker‐Scarpitta A., Vissault S. , Vellend M. (2019). Four decades of plant community change along a continental gradient of warming. DOI: 10.1111/gcb.14568
  40. Bartomeus I., Cazelles K. , Geschke J. (2018). Rcites - the story behind the package. DOI: 10.59350/4q40p-bxr56
  41. Geschke J., Cazelles K. , Bartomeus I. (2018). Rcites: An r package to access the CITES speciesplus database. DOI: 10.21105/joss.01091
  42. Galiana N., Lurgi M., Claramunt-López B., Fortin M., Leroux S., Cazelles K. , Gravel D., Montoya J. (2018). The spatial scaling of species interaction networks. DOI: 10.1038/s41559-018-0517-3
  43. MacDougall A., Harvey E., McCune J., Nilsson K., Bennett J., Firn J., Bartley T., Grace J., Kelly J., Tunney T., McMeans B., Matsuzaki S., Kadoya T., Esch E., Cazelles K. , Lester N., McCann K. (2018). Context-dependent interactions and the regulation of species richness in freshwater fish. DOI: 10.1038/s41467-018-03419-1
  44. Legagneux P., Casajus N., Cazelles K. , Chevallier C., Chevrinais M., Guéry L., Jacquet C., Jaffré M., Naud M., Noisette F., Ropars P., Vissault S. , Archambault P., Bêty J., Berteaux D., Gravel D. (2018). Our house is burning: Discrepancy in climate change vs. Biodiversity coverage in the media as compared to scientific literature. DOI: 10.3389/fevo.2017.00175
  45. Becker-Scarpitta A., Vissault S. , Vellend M. (2018). Four decades of plant community change along a continental gradient of warming. DOI: 10.1101/313379
  46. Kopelke J., Nyman T., Cazelles K. , Gravel D., Vissault S. , Roslin T. (2017). Food‐web structure of willow‐galling sawflies and their natural enemies across europe. DOI: 10.1002/ecy.1832
  47. Massol F., Dubart M., Calcagno V., Cazelles K. , Jacquet C., Kéfi S., Gravel D. (2017). Island biogeography of food webs. DOI: 10.1016/bs.aecr.2016.10.004
  48. Poisot T., Gravel D., Vissault S. . (2017). Mangal - making sense of biotic interaction data. DOI: 10.3897/tdwgproceedings.1.19993
  49. Talluto L., Boulangeat I., Vissault S. , Thuiller W., Gravel D. (2017). Extinction debt and colonization credit delay range shifts of eastern north american trees. DOI: 10.1038/s41559-017-0182
  50. Marchese C., Albouy C., Tremblay J., Dumont D., D'Ortenzio F., Vissault S. , Bélanger S. (2017). Changes in phytoplankton bloom phenology over the north water (NOW) polynya: A response to changing environmental conditions. DOI: 10.1007/s00300-017-2095-2
  51. Beauchesne D. , Grant C., Gravel D., Archambault P. (2016). L'évaluation des impacts cumulés dans l'estuaire et le golfe du saint-laurent : Vers une planification systémique de l'exploitation des ressources. DOI: 10.7202/1036503ar
  52. Cazelles K. , Mouquet N., Mouillot D., Gravel D. (2016). On the integration of biotic interaction and environmental constraints at the biogeographical scale. DOI: 10.1111/ecog.01714
  53. Poisot T., Cirtwill A., Cazelles K. , Gravel D., Fortin M., Stouffer D. (2015). The structure of probabilistic networks. DOI: 10.1111/2041-210x.12468
  54. Cazelles K. , Araújo M., Mouquet N., Gravel D. (2015). A theory for species co-occurrence in interaction networks. DOI: 10.1007/s12080-015-0281-9
  55. Le Stradic S., Silveira F., Buisson E., Cazelles K. , Carvalho V., Fernandes G. (2015). Diversity of germination strategies and seed dormancy in herbaceous species of campo rupestre grasslands. DOI: 10.1111/aec.12221
  56. Beauchesne D. , Jaeger J., St-Laurent M. (2014). Thresholds in the capacity of boreal caribou to cope with cumulative disturbances: Evidence from space use patterns. DOI: 10.1016/j.biocon.2014.03.002
  57. Cazelles B., Cazelles K. . (2014). Major urban centers have weak influence on the timing of dengue epidemics in southeast asia. DOI: 10.1016/j.ijid.2014.03.873
  58. Cazelles B., Cazelles K. , Chavez M. (2014). Wavelet analysis in ecology and epidemiology: Impact of statistical tests. DOI: 10.1098/rsif.2013.0585
  59. Thuiller W., Münkemüller T., Schiffers K., Georges D., Dullinger S., Eckhart V., Edwards T., Gravel D., Kunstler G., Merow C., Moore K., Piedallu C., Vissault S. , Zimmermann N., Zurell D., Schurr F. (2014). Does probability of occurrence relate to population dynamics?. DOI: 10.1111/ecog.00836
  60. Beauchesne D. , Jaeger J., St-Laurent M. (2013). Disentangling woodland caribou movements in response to clearcuts and roads across temporal scales. DOI: 10.1371/journal.pone.0077514
  61. Cazelles K. , Otten W., Baveye P., Falconer R. (2013). Soil fungal dynamics: Parameterisation and sensitivity analysis of modelled physiological processes, soil architecture and carbon distribution. DOI: 10.1016/j.ecolmodel.2012.08.008
  62. St-Laurent M., Renaud L., Leblond M., Beauchesne D. . (2012). Synthèse des connaissances relatives aux impacts des routes sur l'écologie du caribou. DOI: 10.7202/1009105ar

Technical reports

  1. Bellavance V., Deslongchamps G., Beauchesne D., Grant C., Archambault P. (2024). Activité 2 : Identification des habitats potentiels des plumes de mer dans l'estuaire maritime et le golfe du Saint-Laurent. Pêches et Océans Canada.
  2. Deslongchamps G., Bellavance V., Beauchesne D., Grant C., Archambault P. (2024). Activité 1 : Évaluation de la vulnérabilité des coraux et des éponges de l'estuaire maritime et du golfe du Saint-Laurent face aux différents stresseurs. Pêches et Océans Canada.
  3. Beauchesne D., Grant C., Archambault P. (2023). Cumulative effects of natural and human drivers on food webs in the offshore Scotian Shelf Bioregion to support Marine Spatial Planning. Fisheries and Oceans Canada.
  4. Beauchesne D., Grant C., Archambault P. (2022). Cumulative effects assessment of marine vessel activities in the St. Lawrence and the Saguenay River -- Pilot Project for Transport Canada.. Transport Canada.
  5. Stoyel Q., Finnis S., Gomez C., Lazin G., Daigle R., Brager L., Hamer A., Smith C., Beauchesne D., Cazelles K., Butler S. (2022). An open, efficient, and transparent spatial reproducible reporting tool for data discovery and science advice /Fs97-6/3495E-PDF - Government of Canada Publications - Canada.ca.
  6. Lachance S., Beauchesne D.. (2017). Étude de planification systématique de la conservation à l'aide de l'outil Marxan : Rapport final d'analyse d'une étude de cas sur le territoire continental du Plan Nord (Québec). Ministère du Développement Durable et de la Lutte contre les Changements Climatiques.
  7. Grant C., Monpert C., Rondeau M., Beauchesne D., Stoeffler C. (2015). Cartographie de bancs de laminaires à l'aide de méthodes acoustiques.
  8. Beauchesne D., Cadotte M, Dussault C., St-Laurent M. (2014). Revue de littérature critique sur le contrôle des prédateurs dans un contexte de conservation du caribou forestier au Québec. Ministère de la Forêt, de la Faune et des Parcs.
  9. Beauchesne D., Faille G., Brêthes J. (2014). Étude concernant une aire marine protégée aux îles de la Madeleine. Volume 1. Rapport d'étude et analyse écologique. Ministère du Développement durable, de l'Environnement, de la Faune et des Parcs & Parcs Canada.
  10. Grant C., Faille G., Beauchesne D.. (2014). Étude concernant une aire marine protégée aux îles de la Madeleine. Volume 3. Atlas cartographique des îles de la Madeleine. Ministère du Développement durable, de l'Environnement, de la Faune et des Parcs & Parcs Canada.
  11. St-Laurent M., Beauchesne D., Dussault C., Lesmerises F. (2014). Évaluation des impacts des chemins forestiers sur l'écologie du caribou forestier au Québec. Ministère de la Forêt, de la Faune et des Parcs.
  12. Renaud L., Leblond M., Beauchesne D., St-Laurent M. (2010). Synthèse des connaissances relatives aux impacts du réseau routier sur l'écologie du caribou forestier. Revue de littérature présentée à l'équipe de rétablissement provinciale du caribou forestier.